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publications
Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion
Cell Research, 2013Jing Zhou, Shi-Hao Tan, Valerie Nicolas, Chantal Bauvy, Nai-Di Yang, Jianbin Zhang, Yuan Xue, Patrice Codogno, Han-Ming Shen.
The RpoE stress response pathway mediates reduction of enteropathogenic Escherichia coli virulence by zinc
Applied and Environmental Microbiology, 2015Yuan Xue, Jossef Osborn, Anand Panchal, Jay L. Mellies.

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Nature, 2018The Tabula Muris Consortium, Stephen R. Quake, Tony Wyss-Coray, Spyros Darmanis.

Self-assembling Manifolds in Single-cell RNA Sequencing Data
eLife, 2019Alexander J Tarashansky, Yuan Xue, Pengyang Li, Stephen R Quake, Bo Wang.

A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii
eLife, 2020Yuan Xue, Terence T. Theisen, Suchita Rastogi, Abel Ferrel, Stephen R. Quake, John C. Boothroyd.

Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular Parasite Toxoplasma gondii
mBio, 2020Suchita Rastogi, Yuan Xue, Stephen R. Quake, John C. Boothroyd.

Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate
Nature Communications, 2021Pengyang Li, Dania Nanes Sarfati*, Yuan Xue*, Xi Yu, Alexander Joel Tarashansky, Stephen R Quake, Bo Wang

Temperature Effect on Polymerase Fidelity
Journal of Biological Chemistry, 2021Yuan Xue, Ido Braslavsky, Stephen R. Quake

Single-cell profiling identifies ACE+ granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection
Science Advances, 2023Trung M. Pham*, Yuan Xue*, Susan M. Brewer, Kenneth E. Berstein, Stephen R. Quake, Denise M. Monack
talks
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 1900
Teaching experience 2
Workshop, University 1, Department, 1900